Mia awarded research funding from the UMaine Center for Undergraduate Research and the Institute of Medicine!!

Undergraduate researcher Mia Poirier was awarded research funding from the UMaine Center for Undergraduate Research, funded by the UMaine Institute of Medicine!! Mia is a senior in the Biology program at UMaine, with a pre-med concentration, and is a student athlete on the swim team.

She’s been in the Ishaq lab for over a year working on several projects related to broccoli sprouts and microbial communities in the gut. This award will support Mia’s time in the lab while she develops hands-on and research skills, and help her on her path to medical school after graduation. The award will also enable the lab to run a pilot (small) experiment to test the strategy of providing a probiotic to mice to reduce gut inflammation through microbial bioactive compounds.

A diagram with two panels, and a cartoon mouse in the middle. The cartoon mouse is eating broccoli, and a cartoon of the digestive tract is overlaid on the mouse's abdomen. Lines emanating from the broccoli point to the left panel, and show the compound glucoraphanin being converted into sulforaphane by the myrosinase enzyme. Lines emanating from the colon of the mouse point to the panel on the right, showing the same biochemical conversion by gut microbes.
Graphic created by Johanna Holman. Published in Holman et al. 2021 J Nutr Biochem.

“Identifying a Probiotic That Maximizes The Conversion of Glucoraphanin In Vivo To Sulforaphane Found In Broccoli Sprouts”

Abstract: Inflammatory Bowel Disease (IBD) incidence has grown in recent decades and encompasses a broad spectrum of chronic inflammatory disorders. Though there is no definitive cure, there are quantitative and qualitative aspects of IBDs that can be targeted to reduce inflammatory effects, such as genetic factors, epithelial histology, cytokines, and the gut microbiome. Glucosinolates (GLs) found in cruciferous vegetables can be converted into Glucoraphanin (GLR), which can subsequently be converted into sulforaphane (SFN) by plant enzymes. SFN has been shown to contain antioxidant and anti-inflammatory properties in animals; however, animals contain the enzyme required for the conversion of GLR to SFN. It has been demonstrated that mammalian gut microbiota can also convert GLR into SFN available to the host. This is highly variable, and some people exhibit no microbial conversion. This study aims to identify a bacterial strain that can act as a probiotic converting GLR to SFN in vivo in salt-treated Ulcerative Colitis-imitating mice.

The IUCN Microbe Specialist Group published our prospective goals for the conservation of microbes to support planetary health.

The new IUCN Microbe Specialist Group, led by Drs. Jack Gilbert and Raquel Peixoto, has published a prospectus which outlines our goals and activities for the next few years, as well as steps for recruiting research and policy expertise!

Gilbert, J., Scholz, A., Dominguez-Bello, M.G., Korsten, L., Berg, G., Singh, B., Boetius, A., Wang, F., Greening, C., Wrighton, K., Bordenstein, S., Jansson, J., Lennon, J., Souza, V., Allard, S.M., Thomas, T., Cowan, D., Crowther, T., Nguyen, N., Harper, L., Haraoui, L-P., Ishaq, S., McFall-Ngai, M., Redford, K.H., Peixoto, R. 2025. Safeguarding Microbial Biodiversity: Microbial Conservation Specialist Group (MCSG) within the Species Survival Commission of the International Union for Conservation of Nature (IUCN). Editorial Published in multiple journals simultaneously, including mSystems, Sustainable Microbiology, the ISME Journal, and FEMS Microbial Ecology.

The IUCN Microbe group is led by Drs. Jack Gilbert and Raquel Peixoto, who are internationally famous for their research into environmental microbiomes as well as their contributions to conservation. The group recently announced its formation in an editorial:

Gilbert, J., Peioto, R., Scholz, A., Dominguez-Bello, M.G., Korsten, L., Berg, G., Singh, B., Boetius, A., Wang, F., Greening, C., Wrighton, K., Bordenstein, S., Jansson, J., Lennon, J., Souza, V., Thomas, T., Cowan, D., Crowther, T., Nguyen, N., Harper, L., Haraoui, L-P., Ishaq, S., Redford, K. 2025. Launching the IUCN Microbial Conservation Specialist Group as a global safeguard for microbial biodiversity. Nature Microbiology 10:2359–2360. (correspondence)

Now that the Microbe Group has been assembled and set our goals, we will begin setting up international working groups for implementing conservation, and opening the group for global supporting membership.

Back in May, I had the honor of attending a three-day workshop on “Conservation in a Microbial World“, which gathered researchers, innovators, and policy makers to discuss the concept, need, logistics, and possibility of formally making microorganisms part of the considerations of the International Union for the Conservation of Nature (IUCN), the global organization which coordinates the protection of species and ecosystems. The meeting was to provide guidance to the IUCN Species Survival Commission (SSC) on microbial ecology, ecosystems which are at risk or already losing micobial diversity because of degradation and human activities, as well as strategies to bring attention to the need to consider microbes in the health of organisms and ecosystems.

Attendees of the 2025 Conservation in a Microbial World meeting, Scripps, La Jolla.

MSE virtual seminar today: Industrialization drives convergent microbial and physiological shifts in the human metaorganism

The MSE logo is a scale for comparing weights of two things, with microbes being weighed on both sides.

Events will be hosted January – December, 2025, usually on the last Wednesday of every month, 12:00 – 14:00 pm ET. Presented over Zoom.

After each talk, we will continue the discussions in an informal social meeting with MSE. All speakers and members of the audience are welcome to join the social meeting.

Hosted by: Sue Ishaq, MSE, and finacially supported by the University of Maine Institute of Medicine and the UMaine Cultural Affairs/Distinguished Lecture Committee.

Summary

Microorganisms are critical to many aspects of biological life, including human health.  The human body is a veritable universe for microorganisms: some pass through but once, some are frequent tourists, and some spend their entire existence in the confines of our body tissues.  The collective microbial community, our microbiome, can be impacted by the details of our lifestyle, including diet, hygiene, health status, and more, but many are driven by social, economic, medical, or political constraints that restrict available choices that may impact our health.   Access to resources is the basis for creating and resolving social equity—access to healthcare, healthy foods, a suitable living environment, and to beneficial microorganisms, but also access to personal and occupational protection to avoid exposure to infectious disease. This speaker series explores the way that microbes connect public policy, social disparities, and human health, as well as the ongoing research, education, policy, and innovation in this field. 

You can find recordings from previous series here.


“Industrialization drives convergent microbial and physiological shifts in the human metaorganism”

Dr. Mathieu Groussin, PhD

Nov 19, 2025 12:00 ET. This event has passed, watch the recording here.

Dr. Mathieu Groussin

I am an Associate Professor at Kiel University and the Schleswig-Holstein University Hospital, since 2022. My research aims to advance knowledge, develop new theory, and create tools to investigate the ecology, evolution and functions of diverse human-associated microbes. I am particularly dedicated to identifying actionable features in host-associated microbiomes that can be used to improve human health. Recently, I focused on the building of large collections of human gut microbiomes and bacterial strains from worldwide human populations to study the impact of industrialization on gut bacterial genomes and functions. In 2016, I co-founded the non-profit Global Microbiome Conservancy (GMbC) initiative, an international consortium of 80+ collaborators (microbiomeconservancy.org). The mission of the GMbC is to understand the global diversity of human gut bacteria to create new knowledge on the microbiome through ethical practices, promote capacity building activities, and increase representation in microbiome science. Since its inception, I have been leading the GMbC consortium and its scientific program.

His lab group’s website is here.


Logo designed by Alex Guillen

Hear about our broccoli sprout and gut microbes work on ASM’s Meet the Microbiologist!

I recently sat down with Ashley Hagen, who hosts the Meet the Microbiologist podcast at the American Society for Microbiology, to talk about my collaborative research on broccoli sprouts, anti-inflammatories, and gut microbes!

A logo that says "The Broccoli Project"
Designed by Johanna Holman.

MSE virtual seminar next week: Industrialization drives convergent microbial and physiological shifts in the human metaorganism

The MSE logo is a scale for comparing weights of two things, with microbes being weighed on both sides.

Events will be hosted January – December, 2025, usually on the last Wednesday of every month, 12:00 – 14:00 pm ET. Presented over Zoom.

After each talk, we will continue the discussions in an informal social meeting with MSE. All speakers and members of the audience are welcome to join the social meeting.

Hosted by: Sue Ishaq, MSE, and finacially supported by the University of Maine Institute of Medicine and the UMaine Cultural Affairs/Distinguished Lecture Committee.

Summary

Microorganisms are critical to many aspects of biological life, including human health.  The human body is a veritable universe for microorganisms: some pass through but once, some are frequent tourists, and some spend their entire existence in the confines of our body tissues.  The collective microbial community, our microbiome, can be impacted by the details of our lifestyle, including diet, hygiene, health status, and more, but many are driven by social, economic, medical, or political constraints that restrict available choices that may impact our health.   Access to resources is the basis for creating and resolving social equity—access to healthcare, healthy foods, a suitable living environment, and to beneficial microorganisms, but also access to personal and occupational protection to avoid exposure to infectious disease. This speaker series explores the way that microbes connect public policy, social disparities, and human health, as well as the ongoing research, education, policy, and innovation in this field. 

You can find recordings from previous series here.


“Industrialization drives convergent microbial and physiological shifts in the human metaorganism”

Dr. Mathieu Groussin, PhD

Nov 19, 2025 12:00 ET. This event has passed, watch the recording here.

Dr. Mathieu Groussin

I am an Associate Professor at Kiel University and the Schleswig-Holstein University Hospital, since 2022. My research aims to advance knowledge, develop new theory, and create tools to investigate the ecology, evolution and functions of diverse human-associated microbes. I am particularly dedicated to identifying actionable features in host-associated microbiomes that can be used to improve human health. Recently, I focused on the building of large collections of human gut microbiomes and bacterial strains from worldwide human populations to study the impact of industrialization on gut bacterial genomes and functions. In 2016, I co-founded the non-profit Global Microbiome Conservancy (GMbC) initiative, an international consortium of 80+ collaborators (microbiomeconservancy.org). The mission of the GMbC is to understand the global diversity of human gut bacteria to create new knowledge on the microbiome through ethical practices, promote capacity building activities, and increase representation in microbiome science. Since its inception, I have been leading the GMbC consortium and its scientific program.

His lab group’s website is here.


Logo designed by Alex Guillen

MSE seminar next week: “Host-Microbe interactions in an evolution model organism: diversity matters”

The MSE logo is a scale for comparing weights of two things, with microbes being weighed on both sides.

Events will be hosted January – December, 2025, usually on the last Wednesday of every month, 12:00 – 14:00 pm ET. Presented over Zoom.

After each talk, we will continue the discussions in an informal social meeting with MSE. All speakers and members of the audience are welcome to join the social meeting.

Hosted by: Sue Ishaq, MSE, and finacially supported by the University of Maine Institute of Medicine and the UMaine Cultural Affairs/Distinguished Lecture Committee.

Summary

Microorganisms are critical to many aspects of biological life, including human health.  The human body is a veritable universe for microorganisms: some pass through but once, some are frequent tourists, and some spend their entire existence in the confines of our body tissues.  The collective microbial community, our microbiome, can be impacted by the details of our lifestyle, including diet, hygiene, health status, and more, but many are driven by social, economic, medical, or political constraints that restrict available choices that may impact our health.   Access to resources is the basis for creating and resolving social equity—access to healthcare, healthy foods, a suitable living environment, and to beneficial microorganisms, but also access to personal and occupational protection to avoid exposure to infectious disease. This speaker series explores the way that microbes connect public policy, social disparities, and human health, as well as the ongoing research, education, policy, and innovation in this field. 

You can find recordings from previous series here.


“The journey of one Inupiat through academia: Diversity Matters

Dr. Kat Milligan-McLellan, PhD

Oct 29, 2025 12:00 EDT. This event has passed, watch the recording here.

Dr. Kat Milligan-McClellan is Inupiaq and a runner, mother, and microbiologist, not necessarily in that order. Raised in a remote town above the Arctic Circle, she uses her education and skillsets to study topics that are important to her home community. She studies population variation in gut microbiota communities, including which microbe are in the gut, how they interact with the host and with each other, and whether microbes isolated from healthy Alaskan fish can reverse the effects of contaminants found in Alaska waters. In addition to mentoring over 60 people in her lab, she mentors Alaska Native students who will use their education to preserve lands, water, and ways of life in Northwest Alaska through the Caleb Scholars program. She is also Director of the Stickleback Stock Center, which provides stickleback fish to researchers throughout the United States. Her most memorable honor is being blanketed by the Native community at a University of Oregon powwow. Her lab website is here.


Logo designed by Alex Guillen

MSE seminar next week: “Host-Microbe interactions in an evolution model organism: diversity matters”

The MSE logo is a scale for comparing weights of two things, with microbes being weighed on both sides.

Events will be hosted January – December, 2025, usually on the last Wednesday of every month, 12:00 – 14:00 pm ET. Presented over Zoom.

After each talk, we will continue the discussions in an informal social meeting with MSE. All speakers and members of the audience are welcome to join the social meeting.

Hosted by: Sue Ishaq, MSE, and finacially supported by the University of Maine Institute of Medicine and the UMaine Cultural Affairs/Distinguished Lecture Committee.

Summary

Microorganisms are critical to many aspects of biological life, including human health.  The human body is a veritable universe for microorganisms: some pass through but once, some are frequent tourists, and some spend their entire existence in the confines of our body tissues.  The collective microbial community, our microbiome, can be impacted by the details of our lifestyle, including diet, hygiene, health status, and more, but many are driven by social, economic, medical, or political constraints that restrict available choices that may impact our health.   Access to resources is the basis for creating and resolving social equity—access to healthcare, healthy foods, a suitable living environment, and to beneficial microorganisms, but also access to personal and occupational protection to avoid exposure to infectious disease. This speaker series explores the way that microbes connect public policy, social disparities, and human health, as well as the ongoing research, education, policy, and innovation in this field. 

You can find recordings from previous series here.


“The journey of one Inupiat through academia: Diversity Matters

Dr. Kat Milligan-McLellan, PhD

Oct 29, 2025 12:00 EDT. This event has passed, watch the recording here.

Dr. Kat Milligan-McClellan is Inupiaq and a runner, mother, and microbiologist, not necessarily in that order. Raised in a remote town above the Arctic Circle, she uses her education and skillsets to study topics that are important to her home community. She studies population variation in gut microbiota communities, including which microbe are in the gut, how they interact with the host and with each other, and whether microbes isolated from healthy Alaskan fish can reverse the effects of contaminants found in Alaska waters. In addition to mentoring over 60 people in her lab, she mentors Alaska Native students who will use their education to preserve lands, water, and ways of life in Northwest Alaska through the Caleb Scholars program. She is also Director of the Stickleback Stock Center, which provides stickleback fish to researchers throughout the United States. Her most memorable honor is being blanketed by the Native community at a University of Oregon powwow. Her lab website is here.


Logo designed by Alex Guillen

A composite photo of the members of the Board of Directors for MSE as of 2025.

Microbes and Social Equity Working Group named as team winner of Dorothy Jones Diversity & Inclusion Achievement Award!!

I’m thrilled and humbled to announce that the Microbes and Social Equity Working Group (MSE) has been named as the team winner of the Dorothy Jones Diversity & Inclusion Achievement Award from Applied Microbiology International (AMI), the oldest microbiology society in the UK!!!

The prize is part of the Applied Microbiology International Horizon Awards 2025, which celebrate the brightest minds in the field and promote the research, group, projects, products and individuals who continue to help shape the future of applied microbiology. The Dorothy Jones Diversity and Inclusion Achievement Award honours Dorothy Jones’ commitment to promoting diversity and inclusion within STEM. This award acknowledges individuals or organisations that have made significant strides in these areas. It celebrates initiatives that dismantle barriers to participation and representation, especially for underrepresented groups, and recognises inclusive research and experimental design and practice. 

Applied Microbiology International

Lola begins a postdoctoral research position in bioinformatics at the University of New England!!

We’re thrilled to share that Dr. Lola Holcomb, who recently completed her PhD in Biomedical Science at the University of Maine, will be joining Dr. Eben Estell’s lab at the University of New England as a Postdoctoral Research Fellow! Dr. Estell is a new faculty member starting up a lab developing tissue engineered models for bone mechanobiology, and this position will focus on data analysis and conceptual models on how cells interact with mechanical structures, to create better medical treatments.

During her doctoral work in the Ishaq Lab, Lola investigated how diet and gut microbiota interact to influence host health, with a particular focus on glucosinolate-metabolizing bacteria and the effects of broccoli sprout consumption. Her research combined bioinformatics, metagenomic data analysis, and microbial ecology, resulting in new insights into how diet-driven changes in microbial function relate to host physiology.

In her postdoctoral position, Lola will be bridging her bioinformatics expertise with her original background in exercise physiology to explore how mechanical loading, irisin, and bone cell biology are interconnected. This new role beautifully integrates her computational skills with her passion for physiology and health — a truly interdisciplinary continuation of her scientific journey.

One of Lola’s favorite memories from her time in the lab was traveling together to the ISME conference in Cape Town, where she presented her work to an international audience of microbial ecology researchers. It was a fantastic milestone that captured her growth as both a scientist and communicator.

We can’t wait to see where Lola’s research takes her next! Luckily, Lola will still be collaborating a bit with the Ishaq Lab to finish out several projects from her doctoral work. This includes genomic comparisons of bacteria which can convert glucoraphanin into sulforaphane, metagenomics of the gut bacteria of people consuming broccoli sprouts every day for a month, and several collaborations on human microbiome research.

Co-written by Lola Holcomb and Sue Ishaq.

MSE seminar today, “Healthy Soils: Our Hope for a Warming World”

The MSE logo is a scale for comparing weights of two things, with microbes being weighed on both sides.

Events will be hosted January – December, 2025, usually on the last Wednesday of every month, 12:00 – 14:00 pm ET. Presented over Zoom.

After each talk, we will continue the discussions in an informal social meeting with MSE. All speakers and members of the audience are welcome to join the social meeting.

Hosted by: Sue Ishaq, MSE, and finacially supported by the University of Maine Institute of Medicine and the UMaine Cultural Affairs/Distinguished Lecture Committee.

Summary

Microorganisms are critical to many aspects of biological life, including human health.  The human body is a veritable universe for microorganisms: some pass through but once, some are frequent tourists, and some spend their entire existence in the confines of our body tissues.  The collective microbial community, our microbiome, can be impacted by the details of our lifestyle, including diet, hygiene, health status, and more, but many are driven by social, economic, medical, or political constraints that restrict available choices that may impact our health.   Access to resources is the basis for creating and resolving social equity—access to healthcare, healthy foods, a suitable living environment, and to beneficial microorganisms, but also access to personal and occupational protection to avoid exposure to infectious disease. This speaker series explores the way that microbes connect public policy, social disparities, and human health, as well as the ongoing research, education, policy, and innovation in this field. 

You can find recordings from previous series here.


“Healthy Soils: Our Hope for a Warming World”

Dr. Kristen DeAngelis, PhD

Sept 24, 2025 12:00 EDT. This event has passed, watch the recording here.

Headshot of Dr. Kristen DeAngelis, PhD.

Kristen got her PhD in Microbiology from the University of California Berkeley, and was trained in microbial ecology and environmental microbiology as a postdoc at the Lawrence Berkeley National Laboratory and at the Joint BioEnergy Institute. Born in Massachusetts, she has worked at UMass Amherst since 2011, where she is the lead of the Molecular Microbial Ecology Lab in the department of Microbiology. In the past 5 years alone, she became an Elected Fellow of the American Academy of Microbiology, she’s been awarded Distinguished Lecturer from the American Society for Microbiology and UMass, she received the Chancellor’s Medal from UMass, and she was the Harvard Forest Bullard Fellow.

Kristen loves teaching (and learning) bioinformatics and computer programming, crosswords, drawing, and hiking western Mass with her two kids and crazy dog Suki. Her lab website is here.

Kristen was one of the earliest members of MSE, contributing to a science communications piece and the paper which introduced MSE to the world!

City compost programs turn garbage into ‘black gold’ that boosts food security and social justice.” Kristen DeAngelis, Gwynne Mhuireach, Sue Ishaq, The Conversation. June 11, 2020

Ishaq, S.L., Parada, F.J., Wolf, P.G., Bonilla, C.Y., Carney, M.A., Benezra, A., Wissel, E., Friedman, M., DeAngelis, K.M., Robinson, J.M., Fahimipour, A.K., Manus, M.B., Grieneisen, L., Dietz, L.G., Pathak, A., Chauhan, A., Kuthyar, S., Stewart, J.D., Dasari, M.R., Nonnamaker, E., Choudoir, M., Horve, P.F., Zimmerman, N.B., Kozik, A.J., Darling, K.W., Romero-Olivares, A.L., Hariharan, J., Farmer, N., Maki, K.A., Collier, J.L., O’Doherty, K., Letourneau, J., Kline, J., Moses, P.L., Morar, N. 2021.  Introducing the Microbes and Social Equity Working Group: Considering the Microbial Components of Social, Environmental, and Health JusticemSystems 6:4. Special Series: Social Equity as a Means of Resolving Disparities in Microbial Exposure


Logo designed by Alex Guillen